Phenotypic and genotypic characteristics of bacteria of genera Arcanobacterium, Trueperella and Actinomyces, with the emphasis on Arcanobacterium (Trueperella) pyogenes:
Gespeichert in:
| 1. Verfasser: | |
|---|---|
| Format: | Abschlussarbeit Buch |
| Sprache: | English |
| Veröffentlicht: |
Gießen, Lahn
VVB Laufersweiler Verlag
2012
|
| Ausgabe: | 1. Aufl. |
| Schlagworte: | |
| Online-Zugang: | Inhaltsverzeichnis |
| Beschreibung: | VII, 194 S. Ill., graph. Darst. |
| ISBN: | 9783835958616 |
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| 245 | 1 | 0 | |a Phenotypic and genotypic characteristics of bacteria of genera Arcanobacterium, Trueperella and Actinomyces, with the emphasis on Arcanobacterium (Trueperella) pyogenes |c von Muaz Hijazin |
| 250 | |a 1. Aufl. | ||
| 264 | 1 | |a Gießen, Lahn |b VVB Laufersweiler Verlag |c 2012 | |
| 300 | |a VII, 194 S. |b Ill., graph. Darst. | ||
| 336 | |b txt |2 rdacontent | ||
| 337 | |b n |2 rdamedia | ||
| 338 | |b nc |2 rdacarrier | ||
| 502 | |a Zugl.: Gießen, Univ., Diss., 2012 | ||
| 650 | 7 | |a Actinomyces |2 cabt | |
| 650 | 7 | |a Arcanobacterium |2 cabt | |
| 650 | 7 | |a phenotypes |2 cabt | |
| 650 | 7 | |a genotypes |2 cabt | |
| 650 | 7 | |a Arcanobacterium pyogenes |2 cabt | |
| 650 | 7 | |a diseases |2 cabt | |
| 650 | 7 | |a Bacteria |2 cabt | |
| 650 | 0 | 7 | |a Isolierung |g Mikrobiologie |0 (DE-588)4193882-3 |2 gnd |9 rswk-swf |
| 650 | 0 | 7 | |a Arcanobacterium |0 (DE-588)7742029-9 |2 gnd |9 rswk-swf |
| 650 | 0 | 7 | |a Nutztiere |0 (DE-588)4042839-4 |2 gnd |9 rswk-swf |
| 650 | 0 | 7 | |a Haustiere |0 (DE-588)4023819-2 |2 gnd |9 rswk-swf |
| 650 | 0 | 7 | |a Genotypisierung |0 (DE-588)7641829-7 |2 gnd |9 rswk-swf |
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| 689 | 0 | 1 | |a Nutztiere |0 (DE-588)4042839-4 |D s |
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| 689 | 0 | 3 | |a Isolierung |g Mikrobiologie |0 (DE-588)4193882-3 |D s |
| 689 | 0 | 4 | |a Genotypisierung |0 (DE-588)7641829-7 |D s |
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| adam_text | IMAGE 1
TABLE OF CONTENTS
1 INTRODUCTION 1
2 REVIEW OF THE LITERATURE 2
2-1 GENUS ARCANOBACTERIUM AND TRUEPERELLA 2
2-1.1 HISTORY AND TAXONOMY 2
2-1 -2 MORPHOLOGY AND GROWTH PROPERTIES 4
2.2 SPECIES O F GENUS ARCANOBACTERIUM AND TRUEPERELLA 4
2-2.1 ARCANOBACTERIUM {TRUEPERELLA) PYOGENES 4
2.2.1.1 PUTATIVE VIRULENCE FACTORS O F ARCANOBACTERIUM (TRUEPERELLA)
PYOGENES.... 8
2.2.1.1.1 PYOLYSIN 8
2.2.1.1.2 EXTRACELLULAR MATRIX-BINDING PROTEINS 10
2.2.1.1.3 EXOENZYMES 13
2.2.1.1.3.1 NEURAMINIDASES 13
2.2.1.1.3.2 PROTEASES 13
2.2.1.1.3.3 DNASE 14
2.2.1.1.4 FIMBRIAE 14
2.2.2 ARCANOBACTERIUM (TRUEPERELLA) ABORTISUIS 15
2.2.3 ARCANOBACTERIUM (TRUEPERELLA) BERNARDIAE 16
2.2.4 ARCANOBACTERIUM (TRUEPERELLA) BIALOWIEZENSE AND ARCANOBACTERIUM
(TRUEPERELLA) BONASI 17
2-2.5 ARCANOBACTERIUM HAEMOLYTICUM 18
2-2.6 ARCANOBACTERIUM HIPPOCOLEAE 19
2-2.7 ARCANOBACTERIUM PHOCAE 22
2-2.8 ARCANOBACTERIUM PLURANIMALIUM 23
2.3 MATRIX-ASSISTED LASER DESORPTION IONIZATION-TIME O F FLIGHT MASS
SPECTROMETRY (MALDI-TOF M S ) FOR BACTERIAL IDENTIFICATION 24
2-4 MOLECULAR TARGETS FOR PCR-MEDIATED IDENTIFICATION 26
2-4.1 RIBONUCLEIC ACID (RNA) 26
2.4.1.1 1 6 S R R N A G E N E 26
2-4.1.2 16S-23S RDNA INTERGENIC SPACER REGION (ISR) 28
2.4.1.3 23S RRNA GENE 29
2.4.2 SUPEROXIDE DISMUTASE A ENCODING GENE S O D H 29
2.4.3 RNA POLYMERASE ENCODING GENE RPOB 30
2-4.4 HEAT SHOCK PROTEIN OR CHAPERONIN CPN60 ENCODING GENE CPN6 0 31
I
HTTP://D-NB.INFO/1019142278
IMAGE 2
3 MATERIALS AND METHODS 33
3-1 BACTERIAL CULTURES 3 3
3-2 CULTIVATION ON SHEEP AND RABBIT BLOOD AGAR 38
3-3 PRESERVATION O F THE BACTERIA 39
3.4 IDENTIFICATION AND FURTHER CHARACTERIZATION O F THE BACTERIA BY
CONVENTIONAL METHODS 39
3.4.1 GRAM-STAINING AND DETERMINATION O F BACTERIAL CELL MORPHOLOGY 3 9
3.4.2 DETECTION O F BACTERIAL MOTILITY 39
3.4.3 HEMOLYTIC PROPERTIES AND CAMP-LIKE HEMOLYTIC REACTIONS 4 0
3.4.4 BIOCHEMICAL CHARACTERIZATION USING THE API CORYNE TEST SYSTEM 4 1
3.4.5 DETECTION O F THE ENZYMES PYRROLIDONYL ARYLAMIDASE, ALKALINE
PHOSPHATASE AND A-MANNOSIDASE 4 2
3.4.6 DETECTION O F THE ENZYMES |3-GLUCURONIDASE, P-GALACTOSIDASE, A -
GLUCOSIDASE AND N-ACETYL-P-GLUCOSAMINIDASE WITH
4-METHYLUMBELLIFERYLCONJUGATED SUBSTRATES 42
3.4.7 DETECTION O F THE ENZYME CATALASE 4 3
3.4.8 GROWTH ON LOEFFLER MEDIUM 4 3
3-4.9 CASEIN HYDROLYSIS 4 4
3.4.10 DETECTION O F THE ENZYME DNASE 45
3-4.11 DETECTION O F THE ENZYME HYALURONIDASE 4 5
3-4.12 DETECTION O F THE ENZYME AMYLASE 4 6
3.4.13 DETECTION O F THE ENZYME OXIDASE 4 7
3.4.14 DETECTION O F INDOLE PRODUCTION 47
3-4.15 CROSS REACTION WITH STREPTOCOCCAL SEROGROUP G SPECIFIC ANTISERUM
4 8
3.5 IDENTIFICATION O F THE BACTERIA BY MATRIX-ASSISTED LASER DESORPTION
IONIZATION-TIME O F FLIGHT MASS SPECTROMETRY (MALDI-TOF M S ) 4 8
3-5.1 BACTERIAL SAMPLE PREPARATION 48
3-5.2 MALDI-TOF MS MEASUREMENTS AND DATA ANALYSIS 4 9
3.6 IDENTIFICATION AND MOLECULAR CHARACTERIZATION O F THE BACTERIA BY
POLYMERASE CHAIN REACTION (PCR) 50
3.6.1 D N A EXTRACTION AND PREPARATION USING DNEASY TISSUE-KIT 50
3.6.2 IMPLEMENTATION O F THE P C R 51
3-6.3 AGAROSE GEL ELECTROPHORESIS 52
3.6.4 ETHIDIUM BROMIDE STAINING AND DOCUMENTATION 52
3.6.5 P C R AMPLICON PURIFICATION 52
3.6.6 D N A PREPARATION FROM AGAROSE GELS AND SEQUENCING 53
II
IMAGE 3
3-6.7 AMPLIFICATION AND SEQUENCING O F 16S RDNA 54
3.6.8 AMPLIFICATION AND SEQUENCING O F 16S-23S RDNA INTERGENIC SPACER
REGION (ISR) 55
3-6.9 AMPLIFICATION AND SEQUENCING O F 23S RDNA 55
3.6.10 AMPLIFICATION AND SEQUENCING O F GENE CPN60 ENCODING HEAT SHOCK
PROTEIN OR CHAPERONIN CPN60 56
3-6.11 PCR-MEDIATED IDENTIFICATION BY AMPLIFICATION O F SPECIES SPECIFIC
PARTS.... 5 7
3-6.11.1 AMPLIFICATION O F A. (T.) PYOGENES ISR 5 7
3.6.11.2 AMPLIFICATION O F A. (T.) PYOGENES SUPEROXIDE DISMUTASE A
ENCODING
GENE S O D A. 58
3.6.11.3 AMPLIFICATION O F A. (T.) ABORTISUIS I S R 58
3.6.11.4 AMPLIFICATION O F A. HAEMOLYTICUM ISR AND 23S R D N A 59
3-6.11.5 AMPLIFICATION O F A. HAEMOLYTICUM PHOSPHOLIPASE D ENCODING GENE
PLD... 59
3.6.11.6 AMPLIFICATION O F A. HAEMOLYTICUM C A M P FACTOR FAMILY PROTEIN
ENCODING GENE CFA 60
3.6.12 PCR-MEDIATED AMPLIFICATION O F A. (T.) PYOGENES PUTATIVE
VIRULENCE
FACTOR ENCODING GENES 60
3.6.12.1 AMPLIFICATION O F A, (T.) PYOGENES PYOLYSIN ENCODING GENE P L O
60
3.6.12.2 AMPLIFICATION O F A. (T.) PYOGENES COLLAGEN-BINDING PROTEIN
ENCODING
GENE C B P A 61
3.6.12.3 AMPLIFICATION O F A. ( T .) PYOGENES NEURAMINIDASE ENCODING
GENES NANH
AND NANV 61
3.6.12.4 AMPLIFICATION O F A. (T.) PYOGENES FIMBRIAE ENCODING GENES J I
M A , J I M C
AND FIME 62
3-7 STATISTICAL ANALYSIS 62
4 RESULTS 63
4.1 IDENTIFICATION AND FURTHER CHARACTERIZATION O F THE BACTERIA USING
CONVENTIONAL AND MOLECULAR TECHNIQUES 63
4-1-1 PHENOTYPIC AND GENOTYPIC PROPERTIES O F A. (T.) PYOGENES 63
4.1.1.1 PHENOTYPIC RESULTS 63
4.1.1.1.1 HEMOLYTIC PROPERTIES AND CAMP-LIKE HEMOLYTIC REACTIONS 63
4.1.1.1.2 ADDITIONAL PROPERTIES 65
4.1.1.2 IDENTIFICATION O F A. (T.) PYOGENES AND EIGHT OTHER SPECIES O F
GENERA
ARCANOBACTERIUM AND TRUEPERELLA B Y MALDI-TOF M S 66
4.1.1.3 PCR-MEDIATED IDENTIFICATION AND CHARACTERIZATION O F A. (T.)
PYOGENES 7 3
4.1.1.3.1 PCR-MEDIATED IDENTIFICATION BY AMPLIFICATION O F SPECIES
SPECIFIC PARTS.... 7 3
4.1.1.3.1.1 AMPLIFICATION O F A. (T.) PYOGENES ISR 73
III
IMAGE 4
4.1.1.3.1.2 AMPLIFICATION O F A. (T.)PYOGENES S O D A GENE 7 4
4.1.1.3.2 PCR-MEDIATED AMPLIFICATION O F PUTATIVE VIRULENCE FACTOR
ENCODING GENES
O F A. (T.) PYOGENES 75
4.1.1.3.2.1 AMPLIFICATION O F PYOLYSIN ENCODING G E N E P L O 7 5
4.1.1.3.2.2 AMPLIFICATION O F COLLAGEN-BINDING PROTEIN ENCODING GENE C B
P A 7 5
4.1.1.3.2.3 AMPLIFICATION O F NEURAMINIDASE ENCODING GENES N A N K AND
NAN P 76
4.1.1.3.2.4 AMPLIFICATION O F FIMBRIAE ENCODING GENES FIMA.FIMC AND FLME
7 7
4.1.2 PHENOTYPIC AND GENOTYPIC PROPERTIES O F A. (T.) ABORTISUIS 81
4-1-2.1 PHENOTYPIC RESULTS 81
4.1.2.1.1 HEMOLYTIC PROPERTIES AND CAMP-LIKE HEMOLYTIC REACTIONS 81
4.1.2.1.2 CHARACTERIZATION O F A. (T.) ABORTISUIS USING API-CORYNE-TEST
SYSTEM AND
OTHER PHENOTYPICAL TESTS 82
4.1.2.2 IDENTIFICATION O F A (T.) ABORTISUIS BY MALDI-TOF MS 84
4.1.2.3 PCR-MEDIATED IDENTIFICATION O F A. (T.) ABORTISUIS 88
4.1.2.3.1 AMPLIFICATION AND SEQUENCING O F 16S RDNA 88
4.1.2.3.2 AMPLIFICATION O F A. (T.) ABORTISUIS ISR SPECIFIC PARTS 89
4.1.3 PHENOTYPIC AND GENOTYPIC PROPERTIES O F A. HAEMOLYTICUM 90
4-1-3.1 PHENOTYPIC RESULTS 90
4.1.3.1.1 HEMOLYTIC PROPERTIES AND CAMP-LIKE HEMOLYTIC REACTIONS 90
4.1.3.1.2 CHARACTERIZATION O F A. HAEMOLYTICUM USING API-CORYNE-TEST
SYSTEM AND
OTHER PHENOTYPICAL TESTS 92
4-1-3.2 IDENTIFICATION O F A. HAEMOLYTICUM USING MALDI-TOF MS 94
4.1.3.3 PCR-MEDIATED IDENTIFICATION O F A. HAEMOLYTICUM 95
4.1.3.3.1 AMPLIFICATION AND SEQUENCING O F ISR 95
4.1.3.3.2 PCR-MEDIATED IDENTIFICATION B Y AMPLIFICATION O F SPECIES
SPECIFIC
PARTS 9 7
4.1.3.3.2.1 AMPLIFICATION O F A. HAEMOLYTICUM ISR-23S RDNA 9 7
4.1.3.3.2.2 AMPLIFICATION O F A. HAEMOLYTICUM GENE PLD. 9 7
4.1.3.3.2.3 AMPLIFICATION O F A. HAEMOLYTICUM GENE CFA 98
4.1.4 IDENTIFICATION AND FURTHER CHARACTERIZATION O F ACTINOMYCES
WEISSII SP.
NOV 99
4-1-4.1 PHENOTYPIC RESULTS 102
4.1.4.1.1 HEMOLYTIC PROPERTIES AND CAMP-LIKE HEMOLYTIC REACTIONS 102
4.1.4.1.2 CHARACTERIZATION O F A. WEISSII, A. BOVIS D S M 43014 T A N D
A. CANIS D S M 15536T USING THE API-CORYNE-TEST SYSTEM AND OTHER
PHENOTYPICAL TESTS.... 103
4-1-4.2 IDENTIFICATION O F A. WEISSII BY MALDI-TOF M S 106
I V
IMAGE 5
4.1.4.3 PCR-MEDIATED IDENTIFICATION O F A. WEISSII 109
4.1.4.3.1 AMPLIFICATION AND SEQUENCING O F 16S RDNA 109
4.1.4.3.2 AMPLIFICATION AND SEQUENCING O F 23S RDNA 114
4.1.4.3.3 AMPLIFICATION AND SEQUENCING O F CHAPERONIN ENCODING GENE
CPN60 116
5 DISCUSSION 120
5 1 PHENOTYPIC CHARACTERISTICS, MALDI-TOF MS FINGERPRINTING AND
GENOTYPIC CHARACTERISTICS O F A. (T.) PYOGENES 120
5.2 PHENOTYPIC CHARACTERISTICS, MALDI-TOF M S FINGERPRINTING AND
GENOTYPIC CHARACTERISTICS O F A. (T.) ABORTISUIS 134
5.3 PHENOTYPIC CHARACTERISTICS, MALDI-TOF M S FINGERPRINTING AND
GENOTYPIC CHARACTERISTICS OF^4. HAEMOLYTICUM 139
5.4 PHENOTYPIC CHARACTERISTICS, MALDI-TOF MS FINGERPRINTING AND
GENOTYPIC CHARACTERISTICS O F A. WEISSII 144
5-5 CONCLUSION 152
6 SUMMARY 153
7 ZUSAMMENFASSUNG 155
8 REFERENCES 157
V
|
| any_adam_object | 1 |
| author | Hijazin, Muaz |
| author_GND | (DE-588)1026076404 |
| author_facet | Hijazin, Muaz |
| author_role | aut |
| author_sort | Hijazin, Muaz |
| author_variant | m h mh |
| building | Verbundindex |
| bvnumber | BV040740236 |
| ctrlnum | (OCoLC)773928348 (DE-599)DNB1019142278 |
| dewey-full | 636.08969201 |
| dewey-hundreds | 600 - Technology (Applied sciences) |
| dewey-ones | 636 - Animal husbandry |
| dewey-raw | 636.08969201 |
| dewey-search | 636.08969201 |
| dewey-sort | 3636.08969201 |
| dewey-tens | 630 - Agriculture and related technologies |
| discipline | Agrar-/Forst-/Ernährungs-/Haushaltswissenschaft / Gartenbau |
| edition | 1. Aufl. |
| format | Thesis Book |
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| genre | (DE-588)4113937-9 Hochschulschrift gnd-content |
| genre_facet | Hochschulschrift |
| id | DE-604.BV040740236 |
| illustrated | Illustrated |
| indexdate | 2024-07-10T00:32:55Z |
| institution | BVB |
| isbn | 9783835958616 |
| language | English |
| oai_aleph_id | oai:aleph.bib-bvb.de:BVB01-025720187 |
| oclc_num | 773928348 |
| open_access_boolean | |
| owner | DE-188 |
| owner_facet | DE-188 |
| physical | VII, 194 S. Ill., graph. Darst. |
| publishDate | 2012 |
| publishDateSearch | 2012 |
| publishDateSort | 2012 |
| publisher | VVB Laufersweiler Verlag |
| record_format | marc |
| spelling | Hijazin, Muaz Verfasser (DE-588)1026076404 aut Phenotypic and genotypic characteristics of bacteria of genera Arcanobacterium, Trueperella and Actinomyces, with the emphasis on Arcanobacterium (Trueperella) pyogenes von Muaz Hijazin 1. Aufl. Gießen, Lahn VVB Laufersweiler Verlag 2012 VII, 194 S. Ill., graph. Darst. txt rdacontent n rdamedia nc rdacarrier Zugl.: Gießen, Univ., Diss., 2012 Actinomyces cabt Arcanobacterium cabt phenotypes cabt genotypes cabt Arcanobacterium pyogenes cabt diseases cabt Bacteria cabt Isolierung Mikrobiologie (DE-588)4193882-3 gnd rswk-swf Arcanobacterium (DE-588)7742029-9 gnd rswk-swf Nutztiere (DE-588)4042839-4 gnd rswk-swf Haustiere (DE-588)4023819-2 gnd rswk-swf Genotypisierung (DE-588)7641829-7 gnd rswk-swf (DE-588)4113937-9 Hochschulschrift gnd-content Haustiere (DE-588)4023819-2 s Nutztiere (DE-588)4042839-4 s Arcanobacterium (DE-588)7742029-9 s Isolierung Mikrobiologie (DE-588)4193882-3 s Genotypisierung (DE-588)7641829-7 s DE-604 DNB Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=025720187&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Hijazin, Muaz Phenotypic and genotypic characteristics of bacteria of genera Arcanobacterium, Trueperella and Actinomyces, with the emphasis on Arcanobacterium (Trueperella) pyogenes Actinomyces cabt Arcanobacterium cabt phenotypes cabt genotypes cabt Arcanobacterium pyogenes cabt diseases cabt Bacteria cabt Isolierung Mikrobiologie (DE-588)4193882-3 gnd Arcanobacterium (DE-588)7742029-9 gnd Nutztiere (DE-588)4042839-4 gnd Haustiere (DE-588)4023819-2 gnd Genotypisierung (DE-588)7641829-7 gnd |
| subject_GND | (DE-588)4193882-3 (DE-588)7742029-9 (DE-588)4042839-4 (DE-588)4023819-2 (DE-588)7641829-7 (DE-588)4113937-9 |
| title | Phenotypic and genotypic characteristics of bacteria of genera Arcanobacterium, Trueperella and Actinomyces, with the emphasis on Arcanobacterium (Trueperella) pyogenes |
| title_auth | Phenotypic and genotypic characteristics of bacteria of genera Arcanobacterium, Trueperella and Actinomyces, with the emphasis on Arcanobacterium (Trueperella) pyogenes |
| title_exact_search | Phenotypic and genotypic characteristics of bacteria of genera Arcanobacterium, Trueperella and Actinomyces, with the emphasis on Arcanobacterium (Trueperella) pyogenes |
| title_full | Phenotypic and genotypic characteristics of bacteria of genera Arcanobacterium, Trueperella and Actinomyces, with the emphasis on Arcanobacterium (Trueperella) pyogenes von Muaz Hijazin |
| title_fullStr | Phenotypic and genotypic characteristics of bacteria of genera Arcanobacterium, Trueperella and Actinomyces, with the emphasis on Arcanobacterium (Trueperella) pyogenes von Muaz Hijazin |
| title_full_unstemmed | Phenotypic and genotypic characteristics of bacteria of genera Arcanobacterium, Trueperella and Actinomyces, with the emphasis on Arcanobacterium (Trueperella) pyogenes von Muaz Hijazin |
| title_short | Phenotypic and genotypic characteristics of bacteria of genera Arcanobacterium, Trueperella and Actinomyces, with the emphasis on Arcanobacterium (Trueperella) pyogenes |
| title_sort | phenotypic and genotypic characteristics of bacteria of genera arcanobacterium trueperella and actinomyces with the emphasis on arcanobacterium trueperella pyogenes |
| topic | Actinomyces cabt Arcanobacterium cabt phenotypes cabt genotypes cabt Arcanobacterium pyogenes cabt diseases cabt Bacteria cabt Isolierung Mikrobiologie (DE-588)4193882-3 gnd Arcanobacterium (DE-588)7742029-9 gnd Nutztiere (DE-588)4042839-4 gnd Haustiere (DE-588)4023819-2 gnd Genotypisierung (DE-588)7641829-7 gnd |
| topic_facet | Actinomyces Arcanobacterium phenotypes genotypes Arcanobacterium pyogenes diseases Bacteria Isolierung Mikrobiologie Nutztiere Haustiere Genotypisierung Hochschulschrift |
| url | http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=025720187&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
| work_keys_str_mv | AT hijazinmuaz phenotypicandgenotypiccharacteristicsofbacteriaofgeneraarcanobacteriumtrueperellaandactinomyceswiththeemphasisonarcanobacteriumtrueperellapyogenes |